JCanberra.cc

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#include <iostream>
#include <iomanip>
#include <vector>
#include <set>

#include "TROOT.h"
#include "TFile.h"
#include "TH1D.h"
#include "TH2D.h"
#include "TF1.h"
#include "TFitResult.h"

#include "JDetector/JDetector.hh"
#include "JDetector/JDetectorToolkit.hh"
#include "JDetector/JTripod.hh"
#include "JDetector/JTransmitter.hh"
#include "JDetector/JHydrophone.hh"
#include "JDetector/JModule.hh"
#include "JDetector/JModuleRouter.hh"

#include "JSupport/JMultipleFileScanner.hh"
#include "JSupport/JTreeScanner.hh"

#include "JROOT/JRootToolkit.hh"
#include "JROOT/JManager.hh"

#include "JAcoustics/JSoundVelocity.hh"
#include "JAcoustics/JGeometry.hh"
#include "JAcoustics/JEmitter.hh"
#include "JAcoustics/JAcousticsToolkit.hh"
#include "JAcoustics/JHit.hh"
#include "JAcoustics/JEvent.hh"
#include "JAcoustics/JEvt.hh"
#include "JAcoustics/JEvtToolkit.hh"
#include "JAcoustics/JSupport.hh"
#include "JAcoustics/JTransmission_t.hh"

#include "Jeep/JContainer.hh"
#include "Jeep/JProperties.hh"
#include "Jeep/JPrint.hh"
#include "Jeep/JParser.hh"
#include "Jeep/JMessage.hh"


/**
 * \file
 *
 * Example program to plot acoustic fit results.
 * \author mdejong
 */
int main(int argc, char **argv)
{
  using namespace std;
  using namespace JPP;

  typedef JContainer< vector<JTripod> >      tripods_container;
  typedef JContainer< vector<JTransmitter> > transmitters_container;
  typedef JContainer< vector<JHydrophone> >  hydrophones_container;
  typedef JContainer< set<JTransmission_t> > disable_container;

  JMultipleFileScanner<JEvt>  inputFile;
  JLimit_t&               numberOfEvents = inputFile.getLimit();
  string                  detectorFile;
  string                  outputFile;
  JSoundVelocity          V              = getSoundVelocity;    // default sound velocity
  tripods_container       tripods;                              // tripods
  transmitters_container  transmitters;                         // transmitters
  hydrophones_container   hydrophones;                          // hydrophones
  int                     id;                                   // emitter identifier
  disable_container       disable;                              // disable tansmissions
  bool                    revert;
  string                  option;
  int                     numberOfEntries = 21;
  int                     debug;

  try {

    JParser<> zap("Example program to plot acoustic fit results.");

    JProperties properties;

    properties.insert(gmake_property(numberOfEntries));
    
    zap['f'] = make_field(inputFile,       "input file (output of JKatoomba[.sh])");
    zap['n'] = make_field(numberOfEvents)   = JLimit::max();
    zap['a'] = make_field(detectorFile);
    zap['o'] = make_field(outputFile)       = "canberra.root";
    zap['V'] = make_field(V,               "sound velocity")                 = JPARSER::initialised();
    zap['T'] = make_field(tripods,         "tripod data");
    zap['Y'] = make_field(transmitters,    "transmitter data")               = JPARSER::initialised();
    zap['H'] = make_field(hydrophones,     "hydrophone data")                = JPARSER::initialised();
    zap['M'] = make_field(getMechanics,    "mechanics data")                 = JPARSER::initialised();
    zap['E'] = make_field(id,              "emitter identifier (-1 = all)")  = -1;
    zap['!'] = make_field(disable,         "disable transmission")           = JPARSER::initialised();
    zap['r'] = make_field(revert,          "revert disabling of transmissions");
    zap['O'] = make_field(option,          "ROOT fit option, see TH1::Fit.") = "LS";
    zap['@'] = make_field(properties)                                        = JPARSER::initialised();
    zap['d'] = make_field(debug)            = 2;

    zap(argc, argv);
  }
  catch(const exception &error) {
    FATAL(error.what() << endl);
  }


  if (option.find('Q') == string::npos && debug < JEEP::debug_t) { option += 'Q'; }

  JDetector detector;

  try {
    load(detectorFile, detector);
  }
  catch(const JException& error) {
    FATAL(error);
  }

  JHashMap<int, JLocation>   receivers;
  JHashMap<int, JEmitter>    emitters;

  for (JDetector::const_iterator i = detector.begin(); i != detector.end(); ++i) {
    receivers[i->getID()] = i->getLocation();
  }

  for (tripods_container::const_iterator i = tripods.begin(); i != tripods.end(); ++i) {
    emitters[i->getID()]  = JEmitter(i->getID(),
                                     i->getUTMPosition() - detector.getUTMPosition());
  }

  for (transmitters_container::const_iterator i = transmitters.begin(); i != transmitters.end(); ++i) {
    try {
      emitters[i->getID()]  = JEmitter(i->getID(), i->getPosition() + detector.getModule(i->getLocation()).getPosition());
    }
    catch(const exception&) {}                       // if no module available, discard transmitter
  }

  const JGeometry geometry(detector, hydrophones);

  V.set(detector.getUTMZ());


  JManager<JTransmission_t, TH1D> H2(new TH1D("[%].toa", NULL, 1000, -1.0e-2, +1.0e-2));

  for (JDetector::const_iterator module = detector.begin(); module != detector.end(); ++module) {
    for (JHashMap<int, JEmitter>::const_iterator i = emitters.begin(); i != emitters.end(); ++i) {
      if (id == i->first || id == -1) {
        H2[JTransmission_t(i->first, module->getID())];
      }
    }
  }

  typedef JTreeScanner<JEvent, JEvent::JEvaluator>  JTreeScanner_t;

  JTreeScanner_t in(inputFile);

  JTreeScanner_t::iterator p = in.begin();

  while (inputFile.hasNext()) {

    STATUS("event: " << setw(10) << inputFile.getCounter() << '\r'); DEBUG(endl);

    const JEvt*  evt   = inputFile.next();
    const JModel model = getModel(*evt);

    DEBUG("model" << endl << model << endl);

    for ( ; p != in.end() && p-> begin()->getToA() <  evt->UNIXTimeStart - 0.5; ++p) {}

    JTreeScanner_t::iterator q = p; 

    for ( ; q != in.end() && q->rbegin()->getToA() <= evt->UNIXTimeStop  + 0.5; ++q) {}

    DEBUG("events " << distance(p, q) << endl);

    for (JTreeScanner_t::iterator i = p; i != q; ++i) {

      if (id == i->getID() || id == -1) {

        if (emitters.has(i->getID())) {

          const JEmitter& emitter = emitters[i->getID()];

          for (JEvent::const_iterator hit = i->begin(); hit != i->end(); ++hit) {

            if (receivers.has(hit->getID()) && geometry.hasLocation(receivers[hit->getID()])) {

              if ((disable.count(JTransmission_t(i->getID(), hit->getID())) == 0 &&
                   disable.count(JTransmission_t(-1,         hit->getID())) == 0) == !revert) {

                const JLocation& location = receivers[hit->getID()];

                if (geometry    .has(location.getString()) &&
                    model.string.has(location.getString())) {

                  const JGEOMETRY::JString& string     = geometry    [location.getString()];
                  const JMODEL   ::JString& parameters = model.string[location.getString()];
                  const JPosition3D         position   = string.getPosition(parameters, location.getFloor());

                  const double D     = emitter.getDistance(position);
                  const double Vi    = V.getInverseVelocity(D, emitter.getZ(), position.getZ());
                  const double toa   = hit->getToE()  +  D * Vi;

                  H2[JTransmission_t(i->getID(), hit->getID())]->Fill(hit->getToA() - toa);
                }
              }
            }
          }
        }
      }
    }

    p = q;
  }
  STATUS(endl);


  const floor_range range = getRangeOfFloors(detector);

  JManager<int, TH2D> HA(new TH2D("[%].mean", NULL,
                                  getNumberOfStrings(detector) + 0, -0.5, getNumberOfStrings(detector) - 0.5,
                                  range.getLength() + 1, range.getLowerLimit() - 0.5, range.getUpperLimit() + 0.5));

  JManager<int, TH2D> HB(new TH2D("[%].sigma", NULL,
                                  getNumberOfStrings(detector) + 0, -0.5, getNumberOfStrings(detector) - 0.5,
                                  range.getLength() + 1, range.getLowerLimit() - 0.5, range.getUpperLimit() + 0.5));

  for (Int_t i = 1; i <= HA->GetXaxis()->GetNbins(); ++i) {
    HA->GetXaxis()->SetBinLabel(i, MAKE_CSTRING(geometry.at(i-1).first));
    HB->GetXaxis()->SetBinLabel(i, MAKE_CSTRING(geometry.at(i-1).first));
  }

  const JModuleRouter router(detector);

  TF1 f1("f1", "[0]*exp(-0.5*(x-[1])*(x-[1])/([2]*[2]))");

  const vector<Double_t> Q = { 0.33, 0.55, 0.66 };

  for (JManager<JTransmission_t, TH1D>::iterator i = H2.begin(); i != H2.end(); ++i) {

    TH1* h1 = i->second;

    const JLocation location = router.getModule(i->first.rx).getLocation();

    if (h1->GetEntries() >= numberOfEntries) {
    
      vector<Double_t> X(Q.size(), 0.0);

      h1->GetQuantiles(Q.size(), X.data(), Q.data());

      f1.SetParameter(0, h1->GetMaximum());
      f1.SetParameter(1, X[1]);
      f1.SetParameter(2, 0.5*(X[2] - X[0]));

      TFitResultPtr result = h1->Fit(&f1, option.c_str(), "same", X[1] - 5.0 * (X[2] - X[0]), X[1] + 5.0 * (X[2] - X[0]));

      if (result.Get() == NULL) {

        ERROR("Invalid TFitResultPtr " << h1->GetName() << endl);

      } else {

        HA[i->first.tx]->Fill(geometry.getIndex(location.getString()), location.getFloor(), f1.GetParameter(1) * 1.0e3);
        HB[i->first.tx]->Fill(geometry.getIndex(location.getString()), location.getFloor(), f1.GetParameter(2) * 1.0e3);
      }

    } else {

      HA[i->first.tx]->Fill(geometry.getIndex(location.getString()), location.getFloor(), numeric_limits<double>::lowest());
    }
  }


  TFile out(outputFile.c_str(), "recreate");

  out << H2 << HA << HB;

  out.Write();
  out.Close();
}