JHobbit.cc

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#include <string>
#include <iostream>
#include <iomanip>
#include <vector>
#include <map>
 
#include "TROOT.h"
#include "TFile.h"
#include "TH1D.h"
#include "TH2D.h"
#include "TF1.h"
#include "TMath.h"
#include "TFitResult.h"
 
#include "JROOT/JMinimizer.hh"
 
#include "JLang/JLangToolkit.hh"
#include "JSupport/JMeta.hh"
#include "JTools/JRange.hh"
 
#include "JDetector/JDetector.hh"
#include "JDetector/JDetectorToolkit.hh"
#include "JDetector/JTimeRange.hh"
#include "JDetector/JStringRouter.hh"
#include "JDetector/JLocationRouter.hh"
 
#include "JCalibrate/JCalibrateMuon.hh"
 
#include "Jeep/JPrint.hh"
#include "Jeep/JParser.hh"
#include "Jeep/JMessage.hh"
 
namespace {
 
  /**
   * Name of histogram with fit results from JCalibrateMuon.cc.
   */
  const char* const h2_t           =  "h2";
 
  const char* const gauss_t        =  "Gauss";           //!< Gaussian
  const char* const landau_t       =  "Landau";          //!< Landau
  const char* const emg_t          =  "EMG";             //!< Exponentially Modified Gaussian
  const char* const breitwigner_t  =  "BreitWigner";     //!< Breit-Wigner
}
 
 
/**
 * \file
 * Program to fit time-residuals histogram in output of JCalibrateMuon.cc.
 * \author mdejong
 */
int main(int argc, char **argv)
{
  using namespace std;
  using namespace JPP;
 
  vector<string>  inputFile;
  string          outputFile;
  string          detectorFile;
  bool            overwriteDetector;
  string          function;
  JTimeRange      T_ns;
  string          option;
  JTimeRange      E_ns;
  double          WMin;
  int             ID;
  string          target;
  int             debug;
 
  try {
 
    JParser<> zap("Program to fit time-residuals histogram in output of JCalibrateMuon.cc.");
 
    zap['f'] = make_field(inputFile,         "input files (output from JCalibrateMuon).");
    zap['o'] = make_field(outputFile,        "output file.")                                                   = "hobbit.root";
    zap['a'] = make_field(detectorFile,      "detector file.");
    zap['A'] = make_field(overwriteDetector, "overwrite detector file provided through '-a' with correct time offsets.");
    zap['F'] = make_field(function,          "fit function")                                                   = gauss_t, landau_t, emg_t, breitwigner_t;
    zap['T'] = make_field(T_ns,              "ROOT fit range around maximum [ns].")                            = JTimeRange(-7.5,+5.0);
    zap['O'] = make_field(option,            "ROOT fit option, see TH1::Fit.")                                 = "";
    zap['E'] = make_field(E_ns,              "validity range of t0 uncertainty [ns].")                         = JTimeRange( 0.0, 0.5);
    zap['W'] = make_field(WMin,              "minimal histogram contents.")                                    = 100.0;
    zap['D'] = make_field(ID,                "target identifier")                                              = -1;
    zap['R'] = make_field(target,            "option for time calibration.")                                   =  module_t, string_t;
    zap['d'] = make_field(debug)          = 1;
 
    zap(argc, argv);
  }
  catch(const exception &error) {
    FATAL(error.what() << endl);
  }
 
 
  if (!T_ns.is_valid()) {
    FATAL("Invalid fit range [ns] " << T_ns << endl);
  }
 
  JDetector detector;
 
  try {
    load(detectorFile, detector);
  }
  catch(const JException& error) {
    FATAL(error);
  }
 
  const JLocationRouter router(detector);
  
  const JRouter_t* rpm = NULL;
 
  if      (target == module_t)
    rpm = new JModuleRouter_t(detector);
  else if (target == string_t)
    rpm = new JStringRouter_t(detector);
  else
    FATAL("No valid target; check option -R" << endl);
 
  if (option.find('S') == string::npos) { option += 'S'; }
  if (option.find('Q') == string::npos && debug < JEEP::debug_t) { option += 'Q'; }
 
  TH2D* h2 = NULL;
 
  for (vector<string>::const_iterator i = inputFile.begin(); i != inputFile.end(); ++i) {
 
    NOTICE("Processing " << *i << endl);
 
    TFile in(i->c_str(), "exist");
 
    if (!in.IsOpen()) {
      FATAL("File " << *i << " not opened." << endl);
    }
 
    TH2D* p = dynamic_cast<TH2D*>(in.Get(h2_t));
      
    if (p == NULL) {
      FATAL("File " << *i << " has no histogram <" << h2_t << ">." << endl);
    }
 
    if (h2 == NULL)
      h2 = (TH2D*) p->Clone();
    else
      h2->Add(p);
 
    h2->SetDirectory(0);
 
    in.Close();
  }
 
  if (h2 == NULL) {
    FATAL("No histogram <" << h2_t << ">." << endl);
  }
 
  // auxiliary data structure for fit result
 
  struct result_type {
 
    result_type() :
      value(0.0),
      error(0.0)
    {}
 
    result_type(double value,
                double error) :
      value(value),
      error(error)
    {}
 
    double value;
    double error;
  };
 
  typedef map<int, result_type> map_type;    // index -> fit result
 
  map_type zmap;
 
 
  // histogram fit results
 
  const TAxis* x_axis = h2->GetXaxis();
  const TAxis* y_axis = h2->GetYaxis();
 
  TH1D h0("h0", NULL, x_axis->GetNbins(), -0.5, x_axis->GetNbins() - 0.5);
  TH1D hc("hc", NULL, x_axis->GetNbins(), -0.5, x_axis->GetNbins() - 0.5);
  TH1D hq("hq", NULL, x_axis->GetNbins(), -0.5, x_axis->GetNbins() - 0.5);
 
  const floor_range   floors = getRangeOfFloors(detector);
  const JStringRouter strings(detector);
 
  TH2D H2("detector", NULL,
          strings.size(), -0.5, strings.size() - 0.5,
          floors.getUpperLimit(), 1 - 0.5, floors.getUpperLimit() + 0.5);
 
  for (Int_t ix = 1; ix <= H2.GetXaxis()->GetNbins(); ++ix) {
    H2.GetXaxis()->SetBinLabel(ix, MAKE_CSTRING(strings.at(ix-1)));
  }
  for (Int_t iy = 1; iy <= H2.GetYaxis()->GetNbins(); ++iy) {
    H2.GetYaxis()->SetBinLabel(iy, MAKE_CSTRING(iy));
  }
 
  TFile out(outputFile.c_str(), "recreate");
 
  size_t counts = 0;
  size_t errors = 0;
  
  for (Int_t ix = 1; ix <= x_axis->GetNbins(); ++ix) {
 
    const int index = ix - 1; 
    const int id    = rpm->getID(index);
 
    DEBUG("Bin " << setw(4) << ix << " -> " << setw(8) << id << endl);
 
    if (ID != -1 && ID != id) {
      continue;
    }
 
    TH1D h1(MAKE_CSTRING(id << ".1D"), NULL, y_axis->GetNbins(), y_axis->GetXmin(), y_axis->GetXmax());
 
    // start values
    
    Double_t ymax   =  0.0;
    Double_t x0     =  0.0;       // [ns]
    Double_t sigma  =  4.0;       // [ns]
    Double_t W      =  0.0;
 
    for (Int_t iy = 1; iy <= y_axis->GetNbins(); ++iy) {
 
      h1.SetBinContent(iy,      h2->GetBinContent(ix,iy));
      h1.SetBinError  (iy, sqrt(h2->GetBinContent(ix,iy)));
 
      const Double_t x = h1.GetBinCenter (iy);
      const Double_t y = h1.GetBinContent(iy);
      
      W += y;
 
      if (y > ymax) {
        ymax = y;
        x0   = x;
      }
    }
 
    if (W <= WMin) {
 
      WARNING("Not enough entries for slice " << ix << ' ' << W << "; skip fit." << endl);
      
      continue;
    } 
 
    ymax *= 0.9;
 
    const Double_t xmin = x0 + T_ns.getLowerLimit();
    const Double_t xmax = x0 + T_ns.getUpperLimit();
 
 
    TF1* f1 = NULL;
 
    if        (function == gauss_t) {
 
      f1 = new TF1(function.c_str(), "[0]*TMath::Gaus(x,[1],[2])");
 
      f1->SetParameter(0, 0.8*ymax);
      f1->SetParameter(1, x0);
      f1->SetParameter(2, sigma);
 
      f1->SetParError(0, sqrt(ymax) * 0.1);
      f1->SetParError(1, 0.01);
      f1->SetParError(2, 0.01);
 
    } else if (function == landau_t) {
 
      f1 = new TF1(function.c_str(), "[0]*TMath::Landau(x,[1],[2])");
 
      f1->SetParameter(0, 0.8*ymax);
      f1->SetParameter(1, x0);
      f1->SetParameter(2, sigma);
 
      f1->SetParError(0, sqrt(ymax) * 0.1);
      f1->SetParError(1, 0.01);
      f1->SetParError(2, 0.01);
    
    } else if (function == emg_t) {
      
      f1 = new TF1(function.c_str(), "[0]*TMath::Exp(0.5*[3]*(2.0*[1]+[3]*[2]*[2]-2.0*x))*TMath::Erfc(([1]+[3]*[2]*[2]-x)/(TMath::Sqrt(2.0)*[2]))");
 
      f1->SetParameter(0, 0.5*ymax);
      f1->SetParameter(1, x0 - sigma);
      f1->SetParameter(2, sigma);
      f1->SetParameter(3, 0.06);
 
      f1->SetParError(0, sqrt(ymax) * 0.1);
      f1->SetParError(1, 0.01);
      f1->SetParError(2, 0.01);
      f1->SetParError(3, 1.0e-4);
 
    } else if (function == breitwigner_t) {
      
      f1 = new TF1(function.c_str(), "(x <= [1])*[0]*[2]*TMath::BreitWigner(x,[1],[2])+(x > [1])*[0]*[3]*TMath::BreitWigner(x,[1],[3])");
 
      f1->SetParameter(0, 0.8*ymax);
      f1->SetParameter(1, x0);
      f1->SetParameter(2, 15.0);
      f1->SetParameter(3, 25.0);
 
      f1->SetParError(0, sqrt(ymax) * 0.1);
      f1->SetParError(1, 0.01);
      f1->SetParError(2, 0.1);
      f1->SetParError(3, 0.1);
 
    } else {
 
      FATAL("Unknown fit function " << function << endl);
    }
 
 
    DEBUG("Start values:" << endl);
      
    for (int i = 0; i != f1->GetNpar(); ++i) {
      DEBUG(left << setw(12) << f1->GetParName  (i) << ' ' << 
            SCIENTIFIC(12,5) << f1->GetParameter(i) << endl);
    }
 
    // fit
      
    TFitResultPtr result = h1.Fit(f1, option.c_str(), "same", xmin, xmax);
 
    const bool status = result->IsValid() && E_ns(f1->GetParError(1));
 
    if (debug >= notice_t || !result->IsValid()) {
      cout << "Slice: " 
           << setw(4)    << ix                    << ' '
           << setw(16)   << h1.GetName()          << ' '
           << FIXED(7,3) << f1->GetParameter(1)   << " +/- " 
           << FIXED(7,3) << f1->GetParError(1)    << ' ' 
           << FIXED(9,2) << result->Chi2()        << '/'
           << result->Ndf()                       << ' '
           << result->IsValid()
           << E_ns(f1->GetParError(1))            << ' '
           << (status ? "" : "failed")            << endl;
    }
 
    counts += 1;
 
    if (!status) {
      errors += 1;
    }
 
    if (status) {
      zmap[index] = result_type(f1->GetParameter(1), f1->GetParError(1)); 
    }
 
    if (result->Ndf() > 0) {
      hc.SetBinContent(ix, result->Chi2() / result->Ndf());
    }
 
    hq.SetBinContent(ix, status ? 1.0 : 0.0);
 
    h1.Write();
 
    delete f1;
  }
 
 
  if (!zmap.empty()) {
 
    // average time offset
 
    double t0 = 0.0;
 
    for (map_type::const_iterator i = zmap.begin(); i != zmap.end(); ++i) {
      t0 += i->second.value;
    }
 
    t0 /= zmap.size();
 
    NOTICE("Average time offset [ns] " << FIXED(7,2) << t0 << endl);
    NOTICE("Number of fits passed/failed " << counts << "/" << errors << endl);
 
    for (map_type::iterator i = zmap.begin(); i != zmap.end(); ++i) {
      i->second.value -= t0;
    }
    
    for (map_type::const_iterator i = zmap.begin(); i != zmap.end(); ++i) {
      h0.SetBinContent(i->first, i->second.value);
      h0.SetBinError  (i->first, i->second.error);
    }
 
    for (Int_t ix = 1; ix <= H2.GetXaxis()->GetNbins(); ++ix) {
      for (Int_t iy = 1; iy <= H2.GetYaxis()->GetNbins(); ++iy) {
 
        const JLocation location(strings.at(ix-1), iy);
 
        if (router.hasLocation(location)) {
 
          const JModule& module = router.getModule(location);
          const int      index  = rpm->getIndex(module.getID());
 
          if (zmap.count(index) != 0) {
            H2.SetBinContent(ix, iy, zmap[index].value);
          }
        }
      }
    }
 
    if (overwriteDetector) {
 
      NOTICE("Store calibration data on file " << detectorFile << endl);
 
      detector.comment.add(JMeta(argc, argv));
 
      for (size_t string = 0; string != strings.size(); ++string) {
        for (int floor = 1; floor <= floors.getUpperLimit(); ++floor) {
 
          const JLocation location(strings.at(string), floor);
 
          if (router.hasLocation(location)) {
 
            JModule&  module = detector[router.getIndex(location)];
            const int index  = rpm->getIndex(module.getID());
 
            if (zmap.count(index) != 0) {
              module.sub(zmap[index].value);
            }
          }
        }
      }
      
      store(detectorFile, detector);
    }
 
  } else {
 
    NOTICE("No calibration results." << endl);
  }
 
  h0 .Write();
  hc .Write();
  hq .Write();
  h2->Write();
  H2 .Write();  
 
  out.Close();
 
  delete rpm;
}